Gut Microbiome Diet: 7-Day Meal Plan for Better Digestion

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Your gut is home to trillions of bacteria that control your digestion, immune system, and even your mood. When these tiny organisms get out of balance, you might feel bloated, tired, or sick more often. The good news is that you can improve your gut health quickly by eating the right foods.

A young woman happily eating a variety of healthy foods at a table in a bright kitchen filled with plants.

gut microbiome diet meal plan can help restore your digestive balance in just seven days by feeding good bacteria and reducing harmful ones. This eating plan focuses on foods like fermented vegetables, fiber-rich plants, and bone broth that work together to heal your gut lining and support healthy digestion.

The 7-day gut reset approach removes foods that harm gut bacteria while adding foods that help them grow. People often notice less bloating, better energy, and improved bowel movements within the first week. This simple but powerful strategy can transform how you feel from the inside out.

Key Takeaways

  • A gut microbiome diet focuses on fermented foods, prebiotics, and anti-inflammatory ingredients to restore digestive balance
  • Most people see improvements in bloating, energy, and digestion within seven days of following a structured meal plan
  • Long-term gut health requires removing processed foods while regularly eating diverse plant fibers and probiotic-rich foods

What Is the Gut Microbiome and Why It Matters

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The gut microbiome consists of trillions of bacteria, viruses, and fungi living in your digestive tract that directly influence digestion, immune function, and even mood through complex communication pathways. These microorganisms produce essential compounds, train immune cells, and send signals to the brain that affect mental health and inflammation levels throughout the body.

Understanding the Gut Microbiome

The gut microbiome refers to trillions of microorganisms living primarily in the large intestine. This community includes bacteria, viruses, fungi, and other microbes that work together as a complex ecosystem.

Your body contains roughly 38 trillion bacterial cells. That means you are approximately 50% microbial by cell count.

The microbiome performs three critical functions. First, it breaks down dietary fiber that human enzymes cannot digest. Second, it produces essential vitamins like B12, folate, and vitamin K.

Third, these microbes create short-chain fatty acids during fiber fermentation. These compounds fuel colon cells, regulate inflammation, and help control appetite.

Key microbiome functions:

  • Digest complex carbohydrates and fiber
  • Manufacture essential vitamins
  • Produce beneficial short-chain fatty acids
  • Crowd out harmful bacteria
  • Strengthen the gut barrier

Each person’s microbiome is unique. It develops from birth and continues changing based on diet, lifestyle, medications, and environmental factors.

Gut-Brain Axis and Mood

The gut-brain axis creates constant communication between your digestive system and brain through neural, hormonal, and immune pathways. Gut bacteria directly influence mood and mental health through this connection.

Certain gut microbes produce neurotransmitters that regulate emotions. Some bacteria create serotonin, which affects mood and happiness. Others produce GABA, a compound that helps manage stress and anxiety.

The microbiome also influences cortisol production. This stress hormone affects how your body responds to challenging situations. Imbalanced gut bacteria can lead to elevated stress responses.

Research shows that gut health impacts mental clarity and emotional stability. People with diverse, healthy microbiomes often experience better mood regulation and less anxiety.

Gut-brain communication includes:

  • Neurotransmitter production (serotonin, GABA)
  • Stress hormone regulation
  • Inflammation control signals
  • Appetite and craving influences

Role in Immunity and Inflammation

About 70% of the immune system lives in the gut, making the microbiome essential for proper immune function. Beneficial bacteria train immune cells to recognize threats while avoiding overreactions to harmless substances.

Healthy gut bacteria crowd out harmful microorganisms by competing for space and nutrients. This prevents pathogenic bacteria from establishing colonies and causing infections.

The microbiome strengthens the gut barrier that prevents toxins from entering the bloodstream. When this barrier becomes compromised, inflammation can spread throughout the body.

Imbalanced gut bacteria contribute to chronic inflammation. This condition links to various health problems including digestive issues, skin problems, and autoimmune responses.

Immune system benefits:

  • Trains immune cells to identify threats
  • Prevents harmful bacteria colonization
  • Maintains protective gut barrier
  • Reduces systemic inflammation
  • Supports balanced immune responses

Certain probiotic strains show specific immune benefits. Research demonstrates their ability to reduce inflammation markers and support overall immune balance.

Principles of the Gut Microbiome Diet

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The gut microbiome diet focuses on feeding beneficial bacteria through fiber-rich and fermented foods while avoiding processed items that disrupt digestive balance. This approach emphasizes plant diversity, healthy fats, and specific nutrients that reduce inflammation and support optimal digestion.

Key Foods to Support Gut Health

Fermented foods provide live probiotics that help balance gut bacteria. Yogurt with live cultures, kefir, sauerkraut, kimchi, and miso deliver beneficial microorganisms directly to the digestive system.

Fiber-rich foods act as prebiotics, feeding good bacteria in the colon. Legumes like beans, lentils, and chickpeas contain both soluble and insoluble fiber. Whole grains such as oats, quinoa, and brown rice provide sustained fuel for gut microbes.

Fruits and vegetables offer diverse fibers and polyphenols. Berries, apples, and citrus fruits contain pectin, while artichokes, asparagus, and garlic provide inulin. These compounds support microbial fermentation in the colon.

Food CategoryExamplesKey Benefits
Fermented FoodsYogurt, kimchi, kefirLive probiotics
High-Fiber VegetablesBroccoli, artichokes, Brussels sproutsPrebiotic fiber
LegumesLentils, chickpeas, black beansResistant starch

Healthy fats, particularly omega-3 fatty acids, reduce inflammation and support gut barrier function. Fatty fish, walnuts, chia seeds, and flaxseeds provide these essential nutrients.

Foods to Limit or Avoid

Ultra-processed foods contain additives that can disrupt gut bacteria balance. Packaged snacks, fast food, and heavily processed meats often lack fiber and contain emulsifiers that may damage the gut lining.

Excess sugar feeds harmful bacteria and can increase bloating. Sodas, candy, and baked goods high in added sugars should be limited. Artificial sweeteners may also negatively affect gut microbes.

Refined grains like white bread and pasta lack the fiber found in whole grain versions. These foods provide fewer nutrients for beneficial bacteria compared to their whole grain alternatives.

Excessive alcohol can reduce microbial diversity and compromise gut barrier integrity. Red wine in moderation may provide some polyphenols, but regular heavy drinking disrupts the microbiome.

Foods containing certain additives like carboxymethylcellulose and polysorbate-80 may degrade the mucus layer that protects the intestinal wall.

Importance of Diversity and Plant-Based Foods

Plant diversity directly correlates with gut microbiome richness. Research shows people who eat more than 30 different plant types per week have significantly more diverse gut bacteria than those eating fewer varieties.

Each type of plant-based food feeds different bacterial species. Rotating between various vegetables, legumes, nuts, seeds, and herbs ensures multiple beneficial strains receive proper nutrition.

Polyphenols from colorful plant foods act as powerful compounds that gut bacteria metabolize into beneficial substances. Dark berries, green tea, and herbs like turmeric provide these protective molecules.

The combination of different fibers from plant-based foods creates an optimal environment for reducing inflammation and supporting healthy digestion. This diversity helps prevent bloating and promotes regular bowel movements.

Even small increases in plant variety can improve gut health. Adding new herbs to meals or trying different nuts and seeds counts toward the weekly diversity goal.

Building Gut-Healthy Meals: Core Nutrients and Ingredients

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A healthy gut microbiome depends on three key nutritional components: fiber and prebiotics that feed beneficial bacteria, probiotics from fermented foods that introduce good bacteria, and healthy fats, proteins, and antioxidants that reduce inflammation and support digestive function. Understanding how to combine these elements creates meals that actively improve digestive health.

Role of Fiber and Prebiotics

Fiber serves as the primary fuel source for beneficial gut bacteria. The human digestive system cannot break down fiber, but gut microbes convert it into short-chain fatty acids that reduce inflammation and strengthen the intestinal barrier.

Soluble fiber dissolves in water and forms a gel-like substance. It slows digestion and helps stabilize blood sugar levels. Good sources include oats, beans, apples, and citrus fruits.

Insoluble fiber adds bulk to stool and promotes regular bowel movements. Whole grains, vegetables, and nuts provide this type of fiber.

Prebiotics are specialized plant fibers that specifically nourish beneficial bacteria. Garlic and onions contain inulin, a powerful prebiotic that feeds Bifidobacterium species. Jerusalem artichokes, asparagus, and bananas also provide prebiotic compounds.

Adults need 25-38 grams of fiber daily. Most people only consume about half this amount. A 7-day gut-healthy meal plan provides 36-44 grams of fiber per day through diverse plant foods.

Probiotics and Fermented Foods

Probiotics are live microorganisms that colonize the gut and support digestive health. Fermented foods naturally contain these beneficial bacteria through the fermentation process.

Dairy-based options include yogurt with live cultures, kefir, and cottage cheese. Greek yogurt provides particularly high protein content along with probiotics. For dairy-free alternatives, coconut yogurt offers similar benefits.

Vegetable ferments like kimchi and sauerkraut contain Lactobacillus bacteria that survive stomach acid and reach the intestines. These foods also provide vitamin C and fiber.

Other fermented foods include miso paste, which adds umami flavor to soups and marinades while delivering probiotics. Kombucha provides probiotics in beverage form, though sugar content varies by brand.

Research shows that consuming multiple types of fermented foods increases microbiome diversity more effectively than single-strain probiotic supplements. Aim for one serving of fermented foods daily.

Healthy Fats, Proteins, and Antioxidants

Omega-3 fatty acids reduce intestinal inflammation and support the growth of beneficial bacteria. Fatty fish, walnuts, chia seeds, and flax seeds provide these anti-inflammatory compounds.

Olive oil contains polyphenols that act as prebiotics and protect against harmful bacteria. Extra virgin olive oil offers the highest concentration of these beneficial compounds.

Avocados provide monounsaturated fats and fiber. They also contain compounds that increase the absorption of fat-soluble vitamins from other foods.

Protein sources should be easily digestible. Fish, eggs, and lean poultry require fewer digestive enzymes than red meat. Plant proteins from legumes provide both protein and prebiotic fiber.

Antioxidant-rich foods protect gut cells from oxidative damage. Herbs and spices like turmeric, ginger, and oregano contain potent anti-inflammatory compounds. Colorful fruits and vegetables provide diverse antioxidants that support overall digestive function.

Nuts and seeds offer healthy fats, protein, fiber, and minerals. Almonds, pumpkin seeds, and hemp hearts make excellent additions to meals and snacks.

7-Day Gut Microbiome Meal Plan for Better Digestion

A young woman preparing healthy meals in a bright kitchen filled with fresh vegetables, fruits, and fermented foods.

This structured 7-day meal plan introduces gut-healing foods in a systematic approach, starting with microbiome reset foods and progressing through prebiotic-rich meals, fermented options, and fiber variety. Each day targets specific digestive benefits while building sustainable eating habits that support long-term gut health.

Day 1: Microbiome Reset

Breakfast begins with overnight oats topped with blueberries and ground flaxseeds. The oats provide beta-glucan fiber that feeds beneficial bacteria. Blueberries deliver antioxidants that reduce gut inflammation.

Lunch features a simple bone broth with steamed vegetables like bell peppers and carrots. Bone broth contains collagen and amino acids that help repair the intestinal lining. The vegetables add gentle fiber without overwhelming a sensitive digestive system.

Dinner includes baked salmon with roasted sweet potatoes and steamed broccoli. Salmon provides omega-3 fatty acids that reduce inflammation in the digestive tract. Sweet potatoes offer prebiotic fiber that supports beneficial bacteria growth.

Snack options include a small apple with one tablespoon of almond butter. This combination provides both soluble and insoluble fiber along with healthy fats.

Hydration focuses on 8-10 glasses of filtered water throughout the day. Herbal teas like chamomile or ginger can provide additional digestive support. Avoid caffeine and alcohol during this reset phase.

Day 2: Prebiotic Power

Breakfast centers on chia pudding made with unsweetened almond milk and topped with banana slices. Chia seeds expand in liquid to create a gel-like texture that soothes the digestive tract. Bananas provide resistant starch that feeds beneficial gut bacteria.

Lunch showcases a lentil and vegetable soup with carrots, celery, and onions. Lentils contain high amounts of prebiotic fiber that promotes the growth of healthy bacteria. The vegetables add additional fiber and nutrients.

Dinner presents roasted root vegetables including Jerusalem artichokes, parsnips, and carrots alongside grilled chicken. Jerusalem artichokes contain inulin, a powerful prebiotic that specifically feeds bifidobacteria in the colon.

Snack includes a small portion of almonds or walnuts. These nuts provide prebiotic fiber and healthy fats that support gut barrier function.

Meal prep tip involves cooking extra lentils and roasted vegetables to use in tomorrow’s meals. This saves time while maintaining consistency in gut-supporting foods.

Day 3: Fermentation Focus

Breakfast features a smoothie with kefir, banana, and berries. Kefir contains multiple strains of probiotics that help restore beneficial bacteria balance. The fruits provide natural sweetness and additional fiber.

Lunch includes a chickpea salad with fermented vegetables like sauerkraut or kimchi. Chickpeas provide protein and fiber while fermented vegetables deliver live probiotics. The combination supports both bacterial diversity and gut lining health.

Dinner showcases tempeh stir-fry with mixed vegetables and brown rice. Tempeh undergoes fermentation that creates beneficial compounds and makes nutrients more bioavailable. Brown rice adds resistant starch that feeds gut bacteria.

Snack options include plain yogurt with a small amount of berries. Choose yogurt with live active cultures to maximize probiotic benefits.

This day emphasizes probiotic-rich foods that introduce beneficial bacteria directly into the digestive system. The variety of fermented foods ensures exposure to different bacterial strains.

Day 4: Anti-Inflammatory Choices

Breakfast combines turmeric-spiced oatmeal with chopped walnuts and berries. Turmeric contains curcumin, which reduces intestinal inflammation. Walnuts provide omega-3 fatty acids that further support gut healing.

Lunch features a colorful salad with leafy greens, bell peppers, and olive oil dressing. Dark leafy greens contain compounds that promote beneficial bacteria growth. Bell peppers add vitamin C and antioxidants.

Dinner includes wild-caught fish with steamed vegetables and quinoa. Fish provides anti-inflammatory omega-3s while quinoa offers complete protein and fiber. Steaming preserves vegetable nutrients and makes them easier to digest.

Snack consists of green tea and a small portion of anti-inflammatory spices like ginger. These compounds help reduce gut inflammation and support healing.

This anti-inflammatory meal plan targets foods that actively reduce inflammation in the digestive system. Each meal includes multiple anti-inflammatory compounds to support gut repair.

Day 5: Fiber-Rich Variety

Breakfast starts with a high-fiber smoothie containing spinach, apple, chia seeds, and plant-based milk. This combination provides both soluble and insoluble fiber types. The variety ensures different gut bacteria receive appropriate fuel.

Lunch features a three-bean salad with kidney beans, black beans, and chickpeas. Legumes contain diverse fiber types and resistant starch. This variety promotes bacterial diversity in the gut microbiome.

Dinner includes a large mixed vegetable stir-fry with various colorful vegetables over brown rice. Different vegetables provide unique fiber types and phytonutrients. The rainbow of colors indicates diverse beneficial compounds.

Snack options include raw vegetables with hummus made from tahini and chickpeas. This provides additional fiber and plant protein.

Meal prep involves washing and chopping vegetables for easy access throughout the week. Having prepared vegetables encourages consistent fiber intake. Store them in clear containers for visual reminders.

Day 6: Supportive Enzymes and Hydration

Breakfast includes fresh pineapple with coconut yogurt and ground flaxseeds. Pineapple contains bromelain, an enzyme that aids protein digestion. Coconut yogurt provides probiotics without dairy sensitivity concerns.

Lunch features a papaya and avocado salad with lime dressing. Papaya contains papain,

Gut Microbiome Diet Lifestyle Habits and Tips for Success

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Following a gut-friendly meal plan works best when combined with supportive daily habits that enhance digestive health. Simple changes to eating patterns, stress management, and hydration can significantly improve nutrient absorption and strengthen the gut microbiome.

Supporting Digestion Beyond Food

Managing stress plays a crucial role in digestive health since chronic stress disrupts gut bacteria balance. People who practice stress-reduction techniques often see better results on their gut health journey.

Deep breathing exercises before meals activate the parasympathetic nervous system. This helps the body enter “rest and digest” mode for optimal digestion.

Regular sleep patterns support gut microbiome diversity. Adults need 7-9 hours of quality sleep each night for proper digestive function.

Stress-Reducing Activities:

  • 10-minute meditation sessions
  • Light yoga or stretching
  • Nature walks after meals
  • Progressive muscle relaxation

Physical movement helps food move through the digestive tract. A 10-15 minute walk after eating can reduce bloating and support digestion.

Herbal teas like chamomile and peppermint calm the digestive system. These teas work best when consumed between meals rather than with food.

Mindful Eating for Gut Health

Mindful eating practices directly impact how well the body digests and absorbs nutrients. Eating too quickly prevents proper chewing and reduces digestive enzyme production.

Chewing each bite 20-30 times breaks down food particles and mixes them with saliva enzymes. This process begins carbohydrate digestion in the mouth.

Eating in a calm environment without distractions allows the body to focus on digestion. People who eat while watching TV or working often experience more digestive issues.

Mindful Eating Steps:

  1. Sit down at a table
  2. Take three deep breaths before eating
  3. Chew slowly and thoroughly
  4. Put utensils down between bites
  5. Notice flavors and textures

Smaller, more frequent meals prevent overwhelming the digestive system. Eating every 3-4 hours maintains stable blood sugar and supports consistent energy levels.

Hydration and Daily Routines

Proper hydration supports every aspect of digestive health from saliva production to waste elimination. Water helps dissolve nutrients and transport them throughout the body.

Drinking 8-10 glasses of filtered water daily maintains healthy digestion. However, drinking large amounts with meals can dilute digestive enzymes.

The best times to hydrate are between meals rather than during eating. Sipping small amounts with food is acceptable, but avoid drinking large glasses during meals.

Daily Hydration Schedule:

  • Morning: 16-20 oz upon waking
  • Mid-morning: 8 oz between breakfast and lunch
  • Afternoon: 8 oz between lunch and dinner
  • Evening: 8 oz before bedtime

Warm beverages like ginger tea can stimulate digestion before meals. Cold drinks may slow digestive processes, especially for sensitive individuals.

Adding fiber to the diet requires increased water intake to prevent constipation. Each gram of added fiber needs an extra 8 oz of water.

Sustaining Long-Term Gut Health

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Success with gut health maintenance requires adapting the approach to individual needs and navigating common obstacles that arise during dietary transitions. Building sustainable habits prevents gut inflammation while supporting immune function over time.

Personalizing Your Gut Microbiome Diet

Individual responses to gut-healing foods vary significantly based on genetics, existing health conditions, and lifestyle factors. People with sensitive digestive systems may need to introduce fermented foods gradually to avoid initial discomfort.

Food sensitivity considerations include:

  • FODMAP intolerance affecting prebiotic tolerance
  • Histamine sensitivity limiting fermented food options
  • Autoimmune conditions requiring specific modifications

Those following plant-based diets can achieve excellent gut health by emphasizing diverse fiber sources and fermented vegetables. Plant-based modifications focus on legumes, nuts, seeds, and fermented soy products like tempeh and miso.

People with depression may benefit from prioritizing foods that support the gut-brain connection. Omega-3 rich foods, fermented dairy alternatives, and fiber-rich vegetables help maintain neurotransmitter production in the digestive system.

Customization strategies include:

  • Starting with smaller portions of new foods
  • Tracking symptoms in a food diary
  • Working with healthcare providers for medical conditions
  • Adjusting fiber intake based on tolerance levels

Overcoming Common Challenges

Initial digestive changes often discourage people from continuing gut-focused eating plans. Temporary bloating or gas typically resolves within 2-3 weeks as the healthy gut adapts to increased fiber and probiotics.

Common obstacles include:

  • Social situations limiting food choices
  • Time constraints affecting meal preparation
  • Cost concerns about specialty ingredients
  • Family members resistant to dietary changes

Meal planning strategies help maintain consistency during busy periods. Preparing fermented vegetables in batches and freezing gut-friendly soups provides convenient options that support long-term health goals.

Budget-friendly approaches focus on affordable fermented foods like sauerkraut and homemade kefir. Seasonal vegetables and frozen options provide essential nutrients without premium costs while supporting immune function.

Practical solutions:

  • Keep portable gut-friendly snacks available
  • Research restaurant options in advance
  • Involve family members in meal planning
  • Focus on gradual changes rather than complete overhauls

People experiencing persistent digestive issues should consult healthcare providers to rule out underlying conditions that may require specific treatment approaches.

Frequently Asked Questions

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People often have specific questions about gut health meal plans, dietary components, and cleanse structures. Understanding the timeline for digestive improvements and identifying key microbiome-supporting foods helps individuals make informed decisions about their gut health journey.

What does a 7-day meal plan for improving gut health typically include?

7-day microbiome diet meal plan focuses on fermented foods, prebiotic-rich vegetables, and anti-inflammatory ingredients. Each day targets specific gut health goals like microbiome reset, prebiotic power, and fermentation support.

The plan typically includes kefir, kimchi, sauerkraut, and other probiotic foods. Prebiotic vegetables like Jerusalem artichokes, garlic, and onions feed beneficial bacteria.

Anti-inflammatory ingredients such as turmeric, ginger, and wild salmon help reduce gut inflammation. Bone broth provides amino acids that support gut lining repair.

Structured meal plans often provide at least 30 grams of fiber daily and 74 grams of protein. This combination supports digestive health and maintains stable blood sugar levels.

How can a specific diet lead to better digestion?

Targeted diets improve digestion by removing inflammatory foods and adding gut-healing nutrients. The process involves eliminating processed foods, refined sugars, and artificial additives that harm beneficial bacteria.

Introducing digestive enzymes through foods like pineapple and papaya helps break down nutrients. These natural enzymes support the body’s ability to process and absorb food properly.

Fiber-rich foods create bulk that promotes regular bowel movements. Soluble fiber from chia seeds and flax seeds also feeds beneficial gut bacteria.

Probiotic foods introduce live beneficial bacteria directly into the digestive system. These microorganisms help restore balance and improve overall gut function.

What are the key components of a 30-day gut healing diet?

A 30-day gut healing diet extends beyond the initial 7-day reset to allow deeper healing and microbiome restoration. The extended timeframe helps establish lasting dietary habits and bacterial balance.

The first phase removes inflammatory foods like gluten, conventional dairy, and processed items. This elimination period typically lasts 14-21 days to reduce gut irritation.

The second phase gradually reintroduces foods while monitoring digestive responses. This helps identify specific food sensitivities or triggers.

Throughout all phases, the diet emphasizes diverse plant foods, fermented items, and healthy fats. Variety in plant foods supports different beneficial bacterial strains.

Can you explain the 3-3-3 rule diet and its impact on gut health?

The 3-3-3 rule involves eating 3 meals, waiting 3 hours between meals, and stopping food intake 3 hours before bedtime. This pattern supports digestive rest and optimal gut function.

Regular meal timing helps regulate digestive enzymes and stomach acid production. Consistent patterns allow the gut to prepare for incoming food.

The 3-hour gaps between meals provide time for complete digestion and stomach emptying. This prevents food from fermenting in the digestive tract.

Stopping food intake 3 hours before bed improves sleep quality and allows overnight gut repair. The digestive system can focus on healing rather than processing food.

What foods should be incorporated into a diet for optimal microbiome balance?

Fermented foods like kimchi, sauerkraut, kefir, and miso provide diverse beneficial bacteria strains. These foods introduce live microorganisms that help restore gut balance.

Prebiotic foods including garlic, onions, Jerusalem artichokes, and green bananas feed existing beneficial bacteria. These specialized fibers pass through the small intestine undigested to reach the colon.

Fiber-rich vegetables and fruits support regular bowel movements and bacterial diversity. Different types of fiber feed various bacterial strains in the gut.

Anti-inflammatory foods such as wild salmon, turmeric, and leafy greens help reduce gut inflammation. Plant-powered approaches emphasize diverse vegetables and whole foods.

What is the structure of a 14-day gut cleanse meal plan?

14-day gut health meal plan typically divides into two distinct phases for comprehensive digestive support. The first week focuses on elimination and gut rest.

Days 1-7 remove inflammatory foods while introducing gentle, easily digestible options. This phase emphasizes bone broth, cooked vegetables, and simple proteins.

Days 8-14 gradually add more complex foods and increase fiber intake. Fermented foods and diverse plant options are reintroduced systematically.

The extended timeframe allows for deeper microbiome changes than shorter programs. Most people notice improved energy and reduced bloating by day 10-12.

author avatar
Jose Rossello, MD, PhD, MHCM
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